According to a statement by the South African Football Association [SAFA], Kgatlana will miss out in the WAFCON due to personal reasons.
Hildah Magaia will also only join the camp late due to her medical assessment.
The national team is drawn in Group B alongside, Ghana, Mali and Tanzania.
The final squad announcement will be in made on 23 June.
Goalkeepers:
Kaylin Swart, Andile Dlamini, Dineo Magagula, Casey Gordon
Defenders:
Lebohang Ramalepe, Fikile Magama, Shakira O’Malley, Gabriella Salgado, Tiisetso Makhubela, Bambanani Mbane, Karabo Dhlamini, Lonathemba Mhlongo
Midfielders:
Bongeka Gamede, Sibulele Holweni, Regina Mogolola, Linda Mothlalo, Nonhlanhla Mthandi, Refiloe Jane, Amogelang Motau, Noxolo Cesane, Michelle Sampson
Forwards:
Adrielle Mibe, Kgaelebane Mohlakoana, Hildah Magaia, Jermaine Seoposenwe, Nthabiseng Majiya, Bonolo Mokoma, Ronell Donnely